Pysces Free Python simulator for cellular systems
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simulate simulator simulation simulate cellular systems cellular systems simulator cellular systems simulation

Pysces Description

Free Python simulator for cellular systems For a network of coupled reactions Pysces does a stoichiometric matrix analysis, does a complete control analysis and calculates the time course and steady state. Here are some key features of "Pysces": · Input via a text based model description language. · A structural analysis module. · Integrators for the simulation of a cellular system's evolution over time (LSODA). · Non-linear solvers that can be used to calculate a systems steady state (HYBRD, NLEQ2). · A module for performing Metabolic Control Analysis (i.e. elasticities, flux and concentration control coeffcients). · A bifurcation module for the study of systems which exhibit multiple (stable and unstable) steady states (PITCON) · A variety of extra utilites such for performing parameter scans, data output and plotting. · A dynamic module loading framework. · SBML import and export capability. · PySCeS is developed as Open Source software, is distributed under the GNU General Public Licence and uses the Scientific Libraries for Python: SciPy. Requirements: · Python What's New in This Release: · This release has many new features including: support for multicompartment models, enhanced SBML support, a new plotting module and an almost complete overhaul of the core analysis algorithms.

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