ABNER

Biology text analysis made easy.
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ABNER Ranking & Summary

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  • Rating:
  • License:
  • Freeware
  • Publisher Name:
  • Burr Settles
  • Operating Systems:
  • Windows All
  • File Size:
  • 9.5 MB

ABNER Tags


ABNER Description

ABNER is a handy, simple application specially designed for molecular biology text analysis. At ABNER's core is a statistical machine learning system using linear-chain conditional random fields (CRFs) with a variety of orthographic and contextual features. Main features: Simultaneously recognize multiple named entities (2 trained models included). Intuitive, interactive user interface. Optional built-in tokenization and sentence segmentation algorithms, robust to wrapped lines and biomedical abbreviations. Open text files and save annotations (SGML, IOB, and ABNER formats supported). Directory-recursive batch annotation of text files. Java API to incorporate ABNER into customized biomedical text applications. API includes routines for training ABNER on new corpora.


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