AssociationViewer

Analyze the genome with this tool.
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AssociationViewer Ranking & Summary

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  • Rating:
  • License:
  • GPL
  • Publisher Name:
  • Olivier Martin
  • Operating Systems:
  • Windows All
  • File Size:
  • 3.1 MB

AssociationViewer Tags


AssociationViewer Description

AssociationViewer is a Java based program designed to be used in whole genome analysis to display SNPs in a genomic context. The supplementary data is downloaded from various public data sources on the fly and saved locally in a cache and custom data can be added as supplementary tracks. Main features: Display SNPs and their p-values in a genetic context, similar to usual genome browsers Automatically download supplementary information from Ensembl/Biomart Display Hapmap LD plots Print and export the display to various data formats Import external data file such as BED or Wiggle as supplementary tracks Does not require to have a local copy of any data or data source, except for the primary file of SNPs and their respective p-values Users can scroll and browse through their data in real time Small in size (AssociationViewer itself is less than 800 KB, less than 5 MB with the required libraries) Downloaded data is kept in a cache locally for faster access Due to the cache, memory requirement is reasonable


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