Faif A tool to help you with bioinformatics.
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Faif Tags

machine education bioinformatics visual platform bioinformatics bioinformatics library bioinformatics tool bioinformatics GUI bioinformatics package machine learning education Naive Bayesian Classifier bioinformatics workflow P2P bioinformatics service bioinformatics service bioinformatics problem UCSC genome bioinformatics handle bioinformatics data bioinformatics toolkit bioinformatics data warehouse

Faif Description

Fast Artificial Intelligence Framework The C++ library for bioinformatics and artificial intelligence. Basic abstractions (like attribute, domain, state, etc.), DNA primitives (Nucleotide, Chain, EnergyNucleo, SecStruct, FoldedChain, FoldedPair, Codon, CodonAminoTable, Nussinov algorithm), population genetics primitives (Allele, Locus, Loci), Timeseries primitives (TimeSeriesDigit, TimeSeriesReal, linear resampling, autoregressive predictor), search in tree like structures (depth-first, breadth-first, unified cost, A*), Evolutionary Algorithm, EM (Expectaiton-Maximization) algorithm, Hill Climbing algorithm, Naive Bayesian Classifier, cross - validator, Active Object based on boost::thread, Random generators, Gaussian eliminator. * attribute, domain * DNA: (quick start, algorithms description) * hapl: population genetics (Allele, Locus, Loci) * Timeseries: (algorithms description) * learning naive Bayesian classifier (quick start ) * search o uninformed search in tree like structures: searchBreadthFirst, searchDepthFirst (quick start) o informed search: searchUnifiedCost (quick start) o heuristic search: searchAStar (quick start) o Evolutionary Algorithm (quick start) o Hill Climbing Algirhthm (quick start) o EM (Expectation-Maximization) Algorithm * utils o Random - wrapper on boost::random (quick start) o actobj: active object

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