RDP Classifier Naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments from domain to genus
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sequence classify classifier classify rna sequence classify bacterial sequence classify archael sequence

RDP Classifier Description

Naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments from domain to genus RDP Classifier is a naive Bayesian classifier which was developed to provide rapid taxonomic placement based on rRNA sequence data. The RDP Classifier can rapidly and accurately classify bacterial 16s rRNA sequences into the new higher-order taxonomy proposed by Bergey's Trust. It provides taxonomic assignments from domain to genus, with confidence estimates for each assignment.The RDP Classifier is not limited to using the bacterial taxonomy proposed by the Bergey's editors. It worked equally well when trained on the NCBI taxonomy. The RDP Classifier likely can be adapted to additional phylogenetically coherent bacterial taxonomies. RDP Classifier will allow you to easily assign 16S rRNA gene sequences to the new phylogenetically consistent higher-order bacterial taxonomy proposed by Garrity et. al.Hierarchical taxa is based on a naive Bayesian rRNA classifier. The newly trained classifier allows classification of both bacterial and archaeal 16S rRNA sequences. What's New in This Release: · Previous release would classify sequences with no valid words. · Changed to require new variable MIN_GOOD_WORDS and set it to be MIN_SEQ_LEN - Sequence.WORDSIZE.

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